Last updated: 2018-08-09
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Unstaged changes:
Modified: Shiny2.0/ShinyApp1.R
Modified: Shiny2.0/rsconnect/documents/ShinyApp1.R/shinyapps.io/pesticide-explorer/Shiny2.dcf
Modified: analysis/California.Rmd
Modified: analysis/Data.Rmd
Modified: analysis/Tox_load_vig.Rmd
Modified: analysis/neonic_vig.Rmd
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Modified: analysis/about.Rmd
Modified: analysis/about_tox_load.Rmd
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File | Version | Author | Date | Message |
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Rmd | e7d10a2 | ssoba | 2018-08-08 | Revised CA vignette and facetted a plot in intensity vignette |
html | e7d10a2 | ssoba | 2018-08-08 | Revised CA vignette and facetted a plot in intensity vignette |
html | f4ef47c | ssoba | 2018-08-07 | Forgot to wflow_build the last commit |
Rmd | bb1bf40 | ssoba | 2018-08-06 | Got rid of code in GitHub site. Wrote Limitations to Data section and broadened introduction. Moved descriptions in shiny and extended sidebar |
html | bb1bf40 | ssoba | 2018-08-06 | Got rid of code in GitHub site. Wrote Limitations to Data section and broadened introduction. Moved descriptions in shiny and extended sidebar |
html | 36cbc40 | ssoba | 2018-08-06 | Build site. |
html | 15a59b5 | ssoba | 2018-08-03 | Spelling fixes |
html | 1d48d55 | ssoba | 2018-08-03 | Build site. |
Rmd | dd313f8 | ssoba | 2018-08-01 | Fixed all spelling mistakes and some formatting issues |
html | dd313f8 | ssoba | 2018-08-01 | Fixed all spelling mistakes and some formatting issues |
Rmd | 568e676 | ssoba | 2018-08-01 | Finished Intensity vignette |
html | 568e676 | ssoba | 2018-08-01 | Finished Intensity vignette |
Rmd | d4000d2 | ssoba | 2018-08-01 | Added intro to intensity vignette |
Rmd | 5e8616f | ssoba | 2018-08-01 | Re-did Intensity vignette and cleaned up Shiny doc |
html | 5e8616f | ssoba | 2018-08-01 | Re-did Intensity vignette and cleaned up Shiny doc |
html | 8b09700 | ssoba | 2018-08-01 | Build site. |
Rmd | 4b1a915 | ssoba | 2018-07-31 | Added Vignette tab to nav bar, fixed California vignette to be insecticides not all pesticides. Cleaned up the Home page |
html | 4b1a915 | ssoba | 2018-07-31 | Added Vignette tab to nav bar, fixed California vignette to be insecticides not all pesticides. Cleaned up the Home page |
html | 9f2d09a | ssoba | 2018-07-31 | Added Graphs tab to nav bar |
Rmd | 21935b8 | ssoba | 2018-07-30 | Facetted shiny app and updated gitignore |
Rmd | ca7e234 | ssoba | 2018-07-27 | Adding new tab to Shiny app and started toxic load per kg applied vignette |
html | ca7e234 | ssoba | 2018-07-27 | Adding new tab to Shiny app and started toxic load per kg applied vignette |
One of the challenges in determining changes in insecticide use is figuring out how to measure and define those changes. A trend that many researchers have noticed is a decrease in amount of insecticides applied to crops. However, this measurement of insecticide use change only captures one aspect of the story.
In this vignette, we will try to understand insecticide use change not through absolute amount applied, but through intensity measured in toxic load per acre of land.
Version | Author | Date |
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e7d10a2 | ssoba | 2018-08-08 |
36cbc40 | ssoba | 2018-08-06 |
dd313f8 | ssoba | 2018-08-01 |
568e676 | ssoba | 2018-08-01 |
5e8616f | ssoba | 2018-08-01 |
Note the different y-axis scales.
Here we see that orchards and grape insecticides are some of the most intense within the contact toxicity, while both corn and orchards and grapes are the most intense within oral toxicity.
Let’s take a look at intense insecticides were previous to 2014.
Version | Author | Date |
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e7d10a2 | ssoba | 2018-08-08 |
36cbc40 | ssoba | 2018-08-06 |
dd313f8 | ssoba | 2018-08-01 |
568e676 | ssoba | 2018-08-01 |
5e8616f | ssoba | 2018-08-01 |
8b09700 | ssoba | 2018-08-01 |
4b1a915 | ssoba | 2018-07-31 |
ca7e234 | ssoba | 2018-07-27 |
Below we can view the same graph as above, just as line graphs to see differences in crops a bit better.
The crops with decreasing insecticide intensity appear to be Other Crops, Orchards and Grapes, Pasture and Hay, and Rice, with Orchards and grapes accounting for the most significant decrease. The insecticides used in the rest of the crops have either increased in intensity or have oscillated with no significant change (at least visible from the above graphs).
These are interesting trends to see because at the start of this vignette, we saw that insecticides used on Orchards and Grapes were the most intense (in terms of contact toxic load per acre) out of all the crops; yet, we also see that these insecticides have also decreased dramatically in intensity since the late 1990s. One possible explanation would be that the Food Quality Protection Act was passed in 1996 and encouraged a decrease in the use of organophosphate insecticides.
Continue investigating insecticide use by reading about changes in the world’s most widely used class of insecticides: neonicotinoids
sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 16299)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] bindrcpp_0.2.2 scales_0.5.0 forcats_0.3.0 stringr_1.3.1
[5] purrr_0.2.5 readr_1.1.1 tidyr_0.8.1 tibble_1.4.2
[9] ggplot2_2.2.1 tidyverse_1.2.1 dplyr_0.7.5
loaded via a namespace (and not attached):
[1] tidyselect_0.2.4 reshape2_1.4.3 haven_1.1.2
[4] lattice_0.20-35 colorspace_1.3-2 htmltools_0.3.6
[7] yaml_2.1.19 rlang_0.2.1 R.oo_1.22.0
[10] pillar_1.2.3 foreign_0.8-70 glue_1.2.0
[13] R.utils_2.6.0 modelr_0.1.2 readxl_1.1.0
[16] bindr_0.1.1 plyr_1.8.4 munsell_0.5.0
[19] gtable_0.2.0 workflowr_1.1.1 cellranger_1.1.0
[22] rvest_0.3.2 R.methodsS3_1.7.1 psych_1.8.4
[25] evaluate_0.10.1 labeling_0.3 knitr_1.20
[28] parallel_3.5.0 broom_0.4.4 Rcpp_0.12.17
[31] backports_1.1.2 jsonlite_1.5 mnormt_1.5-5
[34] hms_0.4.2 digest_0.6.15 stringi_1.1.7
[37] grid_3.5.0 rprojroot_1.3-2 cli_1.0.0
[40] tools_3.5.0 magrittr_1.5 lazyeval_0.2.1
[43] crayon_1.3.4 whisker_0.3-2 pkgconfig_2.0.1
[46] xml2_1.2.0 lubridate_1.7.4 rstudioapi_0.7
[49] assertthat_0.2.0 rmarkdown_1.10 httr_1.3.1
[52] R6_2.2.2 nlme_3.1-137 git2r_0.22.1
[55] compiler_3.5.0
This reproducible R Markdown analysis was created with workflowr 1.1.1