Last updated: 2018-08-09

workflowr checks: (Click a bullet for more information)

✖ R Markdown file: uncommitted changes
The R Markdown file has staged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.
✔ Repository version: 9972b21
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
```
Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    Extra feature drafts/
    Ignored:    data/big_data/

Staged changes:
    Modified:   analysis/about.Rmd
    Modified:   analysis/about_tox_load.Rmd
```
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	9972b21	ssoba	2018-08-09	HTML files for last commit
Rmd	4cd55fa	ssoba	2018-08-08	Added crop key, Cropland Data Layer download, and About tab to shiny. Also did some minor cleanups.
html	e7d10a2	ssoba	2018-08-08	Revised CA vignette and facetted a plot in intensity vignette
html	f4ef47c	ssoba	2018-08-07	Forgot to wflow_build the last commit
Rmd	bb1bf40	ssoba	2018-08-06	Got rid of code in GitHub site. Wrote Limitations to Data section and broadened introduction. Moved descriptions in shiny and extended sidebar
html	bb1bf40	ssoba	2018-08-06	Got rid of code in GitHub site. Wrote Limitations to Data section and broadened introduction. Moved descriptions in shiny and extended sidebar
html	36cbc40	ssoba	2018-08-06	Build site.
Rmd	15a59b5	ssoba	2018-08-03	Spelling fixes
html	1d48d55	ssoba	2018-08-03	Build site.
Rmd	3ee9a38	ssoba	2018-08-02	Started neonicotinoid vignette!
html	3ee9a38	ssoba	2018-08-02	Started neonicotinoid vignette!
html	dd313f8	ssoba	2018-08-01	Fixed all spelling mistakes and some formatting issues
html	8b09700	ssoba	2018-08-01	Build site.
Rmd	4b1a915	ssoba	2018-07-31	Added Vignette tab to nav bar, fixed California vignette to be insecticides not all pesticides. Cleaned up the Home page
html	4b1a915	ssoba	2018-07-31	Added Vignette tab to nav bar, fixed California vignette to be insecticides not all pesticides. Cleaned up the Home page
html	5d42c88	ssoba	2018-07-31	Build site.
html	2423c9a	ssoba	2018-07-31	Build site.
html	018607b	ssoba	2018-07-19	First graphs are up!
Rmd	4a1ffd6	ssoba	2018-07-17	Updated the Home and About pages and added the big_data folder to .gitignore
html	4a1ffd6	ssoba	2018-07-17	Updated the Home and About pages and added the big_data folder to .gitignore
Rmd	60328cd	ssoba	2018-07-13	Setup #2 from Mac
html	60328cd	ssoba	2018-07-13	Setup #2 from Mac
html	3abf4ac	ssoba	2018-07-13	Setting up the website
Rmd	2101c03	ssoba	2018-07-13	Start workflowr project.

Authorship and Data Sources

This site was built by Sara Soba, working with Professor Maggie Douglas, during the summer of 2018.

The data used on this website were the result of an extensive aggregation process. The data ultimately originated from four different public sources:

Data on amount of pesticide applied originated from the USGS Pesticide National Synthesis Project. NOTE: This dataset provides both a high and low estimate for pesticide use. We used the more conservative low estimate.
Data on toxicity for each compound came from the EPA and the Pesticide Properties Database of University of Hertfordshire
Data for crop acreage originated from the USDA

For questions regarding the data aggregation process or about the project at large, please email Professor Maggie Douglas at douglasm[at]dickinson.edu.

Limitations of our Data

Although we made our best efforts to utilize the most sufficient and applicable data, there are some limitations to our study. First, ld50 units are determined through acute insecticide exposure to adult honeybees and therefore do not account for effect on larval honeybees or the effects of chronic exposure to insecticides. Additionally, ld50 units do not account for the synergistic harmful effects of insecticides, pathogens, and changing floral resources. Finally, our data only contain metrics for insecticide use in agricultural lands and therefore do not account for insecticide use in urban or non-agricultural habitats.

This reproducible R Markdown analysis was created with workflowr 1.1.1

About

Authorship and Data Sources

Limitations of our Data